PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.C86N9
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 654aa    MW: 76060.5 Da    PI: 9.0364
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.C86N9genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.31.1e-10439479346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       WT+eE e l++ v+q+G++ +k+Ia+ mg  + + ++k+ w+ 
      Aradu.C86N9 439 TWTAEEIEFLKKTVEQHGSD-FKSIAEAMG--KNRLHVKDQWRR 479
                      7*******************.********9..78999*****97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0032363434IPR001005SANT/Myb domain
PROSITE profilePS500905.854432480IPR017877Myb-like domain
SMARTSM007171.5E-7436483IPR001005SANT/Myb domain
SuperFamilySSF466894.24E-7437493IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.4E-8439490IPR009057Homeodomain-like
CDDcd001672.95E-4439481No hitNo description
PfamPF139212.6E-12440497No hitNo description
PROSITE profilePS500906.156481550IPR017877Myb-like domain
SMARTSM007179485553IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-4491551IPR009057Homeodomain-like
PROSITE profilePS500907.352552605IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MDEKVKKSKT EEICLEPNDR KKDKHMKKKK KHQNDKALNS DKILEGNCID DDAERQACSN  60
DKFTRNKEED GNISKKLKKK RIKDTEVLHN AIVDDKILQV MDDNQKSKRK KRNICSDSLT  120
AIQEIGSSKP NKRGKVVGDY EFKDHEGDPP LARISTGDAN AHSLVNEVDD QGKKTEKNKK  180
ELREKGDYFV VPSDRQDKET EKVIINKVKW IEEEDCKTNK GEDRQGKKMK KKKKLRNKNK  240
SKFESTEDDQ NCAEANEGDD NNQGRQRKKK LSNKRKSKDK SEFKSSKDDQ HCANDNEGDD  300
DNLGKKMKKG KQSEESKSNE SNEVNDQGKK TKINKKTKEG TTSKRKRVTF SDQVEVCGDG  360
LIRGQRYTNE EDEKIKQAVF DYIETHQLGD EGLDMVLNTR YHPQLKNCWK EIGVALPHRP  420
YMSVYYRAHI LFTRDEKHTW TAEEIEFLKK TVEQHGSDFK SIAEAMGKNR LHVKDQWRRI  480
KMTRKRGAWS QEEYQKVFDL VSVDLRARAL EDTRNKKHGM LRDNIGWEAI SDKLGTRWNG  540
GICQKWYSQL TSPMVDQGIW SDTDDYRLVD ALFSLDACSM EEVDWDNLLE QRDGELCRKR  600
WNQMVRYIGE HGRKSFSEQV EILAKRYCPD LLEAREAFDS KPVICGRSCE NILP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015939510.10.0PREDICTED: cyclin-D-binding Myb-like transcription factor 1
RefseqXP_015939511.10.0PREDICTED: cyclin-D-binding Myb-like transcription factor 1
TrEMBLA0A0B2SVJ41e-171A0A0B2SVJ4_GLYSO; Cyclin-D-binding Myb-like transcription factor 1
TrEMBLI1LYQ81e-171I1LYQ8_SOYBN; Uncharacterized protein
STRINGGLYMA13G19060.11e-170(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67041931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-114MYB_related family protein